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Sample GSM1365906 Query DataSets for GSM1365906
Status Public on Apr 07, 2015
Title Ovarian cancer cell control (rep1)
Sample type genomic
Source name cell line
Organism Homo sapiens
Characteristics cell line: SKOV3
cell type: ovarian cancer
treatment: control
Treatment protocol Cells were treated with TGF-beta at the dose of 5 ng/ml.
Growth protocol Cells were maintained in medium DMGM.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from cells using Qiagen QiaAMP kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Infinium HD Methylation Assay Protocol
Hybridization protocol DNA was amplified, fragmented, and hybridized to Illumina Infinium HumanMethylation450 BeadChip using standard Infinium HD Methylation Assay protocol.
Scan protocol Arrays were imaged with HiScan Reader using recommended Illumina scanner settings.
Description Ovarian cancer cells without TGF-beta stimulation used as control.
Data processing GenomeStudio v2011.2 with Methylation module v1.8.5
Unmethylated and methylated signal intensities
Submission date Apr 08, 2014
Last update date Apr 07, 2015
Contact name Horacio Cardenas
Phone 317-274-7305
Organization name Indiana University
Street address 980 West Walnut Street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
Platform ID GPL13534
Series (1)
GSE56621 TGF-beta stimulation in ovarian cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.72250
cg00000108 0.84348
cg00000109 0.82814
cg00000165 0.59106
cg00000236 0.84607
cg00000289 0.74825
cg00000292 0.86972
cg00000321 0.80528
cg00000363 0.87889
cg00000622 0.03679
cg00000658 0.80612
cg00000714 0.42931
cg00000721 0.87997
cg00000734 0.21545
cg00000769 0.09562
cg00000807 0.89169
cg00000884 0.75536
cg00000905 0.13365
cg00000924 0.48731
cg00000948 0.79594

Total number of rows: 485577

Table truncated, full table size 9017 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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