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Sample GSM1365523 Query DataSets for GSM1365523
Status Public on Feb 23, 2015
Title 0711C
Sample type genomic
 
Source name B-cell acute lymphoblastic leukemia with TCF3/PBX1
Organism Homo sapiens
Characteristics tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 7.7
gender: F
cytogenetics: TCF3/PBX1
Extracted molecule genomic DNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Methylation data of B-cell acute lymphoblastic leukemia cells
B-ALL, TCF3/PBX1
Data processing Illumina GenomeStudio software
Non-normalized data file contains unmethylated and methylated signal intensities
Normalized data file contains Average Beta
 
Submission date Apr 08, 2014
Last update date Feb 23, 2015
Contact name Seung-Tae Lee
E-mail(s) essere.lee@gmail.com
Phone +82-10-9933-5465
Organization name UCSF
Street address 1450 3rd Street
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL13534
Series (2)
GSE56600 Methylation data of pediatric B-cell acute leukemias
GSE56602 Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias

Supplementary data files not provided
Processed data are available on Series record

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