|
Status |
Public on Feb 23, 2015 |
Title |
0532C |
Sample type |
genomic |
|
|
Source name |
B-cell acute lymphoblastic leukemia with ETV6/RUNX1 translocation
|
Organism |
Homo sapiens |
Characteristics |
tissue: bone marrow / peripheral blood subjects: children with B-ALL (California Childhood Cancer Study) age: 6.6 gender: M cytogenetics: ETV6/RUNX1
|
Extracted molecule |
genomic DNA |
Extraction protocol |
AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
Methylation data of B-cell acute lymphoblastic leukemia cells B-ALL, ETV6/RUNX1
|
Data processing |
Illumina GenomeStudio software Non-normalized data file contains unmethylated and methylated signal intensities Normalized data file contains Average Beta
|
|
|
Submission date |
Apr 08, 2014 |
Last update date |
Feb 23, 2015 |
Contact name |
Seung-Tae Lee |
E-mail(s) |
essere.lee@gmail.com
|
Phone |
+82-10-9933-5465
|
Organization name |
UCSF
|
Street address |
1450 3rd Street
|
City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94158 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE56600 |
Methylation data of pediatric B-cell acute leukemias |
GSE56602 |
Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias |
|