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Sample GSM1365301 Query DataSets for GSM1365301
Status Public on Feb 23, 2015
Title 0831C
Sample type RNA
 
Source name B-cell acute lymphoblastic leukemia with other cytogenetics
Organism Homo sapiens
Characteristics tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 8.1
gender: F
cytogenetics: others
Treatment protocol Bone marrow was isolated from B-ALL patients
Growth protocol none
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol 1 μg of high-quality total RNA was amplified and labeled (NuGen Ovation)
 
Hybridization protocol Following fragmentation, cRNA were hybridized onto GeneChip Human Gene 1.0 ST Array (Affymetrix) according to Affymetrix's instructions.
Scan protocol GeneChips were scanned using the Affymetrix genechip scanner
Description Gene expression data of B-cell acute lymphoblastic leukemia cells
B-ALL, others
Data processing Data was processed and normalized using the Expression Console software (Affymetrix) with the standard Robust Multi-array Average (RMA) algorithm
 
Submission date Apr 08, 2014
Last update date Feb 23, 2015
Contact name Seung-Tae Lee
E-mail(s) essere.lee@gmail.com
Phone +82-10-9933-5465
Organization name UCSF
Street address 1450 3rd Street
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6244
Series (2)
GSE56599 Expression data of pediatric B-cell acute leukemias
GSE56602 Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias

Data table header descriptions
ID_REF
VALUE RMA-normalized Signal intensity

Data table
ID_REF VALUE
7896736 6.19902
7896738 3.109715
7896740 4.111575
7896742 7.202931
7896744 5.428926
7896746 10.41812
7896748 9.472777
7896750 5.395329
7896752 10.68162
7896754 5.48887
7896756 6.879707
7896759 7.160888
7896761 7.227925
7896779 7.298734
7896798 7.330547
7896817 7.399607
7896822 6.725087
7896859 6.964107
7896861 4.464365
7896863 5.411548

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1365301_45.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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