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Sample GSM1365293 Query DataSets for GSM1365293
Status Public on Feb 23, 2015
Title 1412C
Sample type RNA
Source name B-cell acute lymphoblastic leukemia with ETV6/AML25 translocation
Organism Homo sapiens
Characteristics tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 14
gender: M
cytogenetics: ETV6/AML1
Treatment protocol Bone marrow was isolated from B-ALL patients
Growth protocol none
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol 1 μg of high-quality total RNA was amplified and labeled (NuGen Ovation)
Hybridization protocol Following fragmentation, cRNA were hybridized onto GeneChip Human Gene 1.0 ST Array (Affymetrix) according to Affymetrix's instructions.
Scan protocol GeneChips were scanned using the Affymetrix genechip scanner
Description Gene expression data of B-cell acute lymphoblastic leukemia cells
Data processing Data was processed and normalized using the Expression Console software (Affymetrix) with the standard Robust Multi-array Average (RMA) algorithm
Submission date Apr 08, 2014
Last update date Feb 23, 2015
Contact name Seung-Tae Lee
Phone +82-10-9933-5465
Organization name UCSF
Street address 1450 3rd Street
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
Platform ID GPL6244
Series (2)
GSE56599 Expression data of pediatric B-cell acute leukemias
GSE56602 Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias

Data table header descriptions
VALUE RMA-normalized Signal intensity

Data table
7896736 6.724597
7896738 3.403358
7896740 4.056733
7896742 7.91802
7896744 5.536987
7896746 11.33374
7896748 11.07692
7896750 7.463762
7896752 11.59905
7896754 5.322436
7896756 6.789103
7896759 7.377003
7896761 7.47889
7896779 7.268499
7896798 7.602172
7896817 7.910871
7896822 6.780803
7896859 6.886749
7896861 4.783859
7896863 5.704873

Total number of rows: 33297

Table truncated, full table size 548 Kbytes.

Supplementary file Size Download File type/resource
GSM1365293_81.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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