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Sample GSM1365253 Query DataSets for GSM1365253
Status Public on Feb 23, 2015
Title 0240C
Sample type RNA
 
Source name B-cell acute lymphoblastic leukemia with hyperdiploid chromosomes
Organism Homo sapiens
Characteristics tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 4.7
gender: M
cytogenetics: hyperdiploid
Treatment protocol Bone marrow was isolated from B-ALL patients
Growth protocol none
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol 1 μg of high-quality total RNA was amplified and labeled (NuGen Ovation)
 
Hybridization protocol Following fragmentation, cRNA were hybridized onto GeneChip Human Gene 1.0 ST Array (Affymetrix) according to Affymetrix's instructions.
Scan protocol GeneChips were scanned using the Affymetrix genechip scanner
Description Gene expression data of B-cell acute lymphoblastic leukemia cells
B-ALL, hyperdiploid
Data processing Data was processed and normalized using the Expression Console software (Affymetrix) with the standard Robust Multi-array Average (RMA) algorithm
 
Submission date Apr 08, 2014
Last update date Feb 23, 2015
Contact name Seung-Tae Lee
E-mail(s) essere.lee@gmail.com
Phone +82-10-9933-5465
Organization name UCSF
Street address 1450 3rd Street
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6244
Series (2)
GSE56599 Expression data of pediatric B-cell acute leukemias
GSE56602 Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias

Data table header descriptions
ID_REF
VALUE RMA-normalized Signal intensity

Data table
ID_REF VALUE
7896736 6.332327
7896738 3.323176
7896740 3.472263
7896742 7.460905
7896744 5.034286
7896746 11.44868
7896748 11.48029
7896750 7.741363
7896752 11.56002
7896754 6.018722
7896756 6.269871
7896759 6.453121
7896761 7.22823
7896779 7.457226
7896798 7.590671
7896817 7.981382
7896822 6.588258
7896859 7.004091
7896861 4.340896
7896863 5.455418

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1365253_09.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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