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Sample GSM1365247 Query DataSets for GSM1365247
Status Public on Feb 23, 2015
Title 0427C
Sample type RNA
 
Source name B-cell acute lymphoblastic leukemia with hyperdiploid chromosomes
Organism Homo sapiens
Characteristics tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 2.3
gender: F
cytogenetics: hyperdiploid
Treatment protocol Bone marrow was isolated from B-ALL patients
Growth protocol none
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol 1 μg of high-quality total RNA was amplified and labeled (NuGen Ovation)
 
Hybridization protocol Following fragmentation, cRNA were hybridized onto GeneChip Human Gene 1.0 ST Array (Affymetrix) according to Affymetrix's instructions.
Scan protocol GeneChips were scanned using the Affymetrix genechip scanner
Description Gene expression data of B-cell acute lymphoblastic leukemia cells
B-ALL, hyperdiploid
Data processing Data was processed and normalized using the Expression Console software (Affymetrix) with the standard Robust Multi-array Average (RMA) algorithm
 
Submission date Apr 08, 2014
Last update date Feb 23, 2015
Contact name Seung-Tae Lee
E-mail(s) essere.lee@gmail.com
Phone +82-10-9933-5465
Organization name UCSF
Street address 1450 3rd Street
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6244
Series (2)
GSE56599 Expression data of pediatric B-cell acute leukemias
GSE56602 Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias

Data table header descriptions
ID_REF
VALUE RMA-normalized Signal intensity

Data table
ID_REF VALUE
7896736 5.769328
7896738 3.736912
7896740 3.585526
7896742 6.819544
7896744 4.981812
7896746 9.719365
7896748 8.739672
7896750 4.621842
7896752 9.841947
7896754 5.166427
7896756 6.444488
7896759 6.784253
7896761 7.302179
7896779 7.310244
7896798 7.555992
7896817 7.534023
7896822 6.654091
7896859 6.917684
7896861 4.193267
7896863 6.082365

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1365247_21.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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