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Sample GSM1365244 Query DataSets for GSM1365244
Status Public on Feb 23, 2015
Title 0556C
Sample type RNA
 
Source name B-cell acute lymphoblastic leukemia with hyperdiploid chromosomes
Organism Homo sapiens
Characteristics tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 4
gender: M
cytogenetics: hyperdiploid
Treatment protocol Bone marrow was isolated from B-ALL patients
Growth protocol none
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol 1 μg of high-quality total RNA was amplified and labeled (NuGen Ovation)
 
Hybridization protocol Following fragmentation, cRNA were hybridized onto GeneChip Human Gene 1.0 ST Array (Affymetrix) according to Affymetrix's instructions.
Scan protocol GeneChips were scanned using the Affymetrix genechip scanner
Description Gene expression data of B-cell acute lymphoblastic leukemia cells
B-ALL, hyperdiploid
Data processing Data was processed and normalized using the Expression Console software (Affymetrix) with the standard Robust Multi-array Average (RMA) algorithm
 
Submission date Apr 08, 2014
Last update date Feb 23, 2015
Contact name Seung-Tae Lee
E-mail(s) essere.lee@gmail.com
Phone +82-10-9933-5465
Organization name UCSF
Street address 1450 3rd Street
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL6244
Series (2)
GSE56599 Expression data of pediatric B-cell acute leukemias
GSE56602 Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias

Data table header descriptions
ID_REF
VALUE RMA-normalized Signal intensity

Data table
ID_REF VALUE
7896736 7.443741
7896738 4.698456
7896740 4.911443
7896742 7.146714
7896744 6.799288
7896746 11.35751
7896748 11.89879
7896750 7.965444
7896752 11.76446
7896754 6.292538
7896756 6.743531
7896759 6.987045
7896761 6.874423
7896779 7.094207
7896798 7.318856
7896817 7.480469
7896822 6.760804
7896859 6.69255
7896861 4.150356
7896863 5.389466

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1365244_29.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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