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Sample GSM136419 Query DataSets for GSM136419
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #35
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 35
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: NEG, Her2Neu: POS, Stage: IIB, Cyclin E: POS
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.88886813
1053_at 6.216525682
117_at 6.494860837
121_at 8.691069219
1255_g_at 4.290218763
1294_at 7.482399611
1316_at 6.332969075
1320_at 5.077050225
1405_i_at 5.465128485
1431_at 4.157864771
1438_at 7.037725868
1487_at 7.7978039
1494_f_at 6.690069387
1598_g_at 9.392927076
160020_at 7.722072965
1729_at 8.869127173
1773_at 5.342517729
177_at 5.218281211
179_at 8.927898389
1861_at 5.866934487

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136419.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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