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Sample GSM136417 Query DataSets for GSM136417
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #29
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 29
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: POS, Stage: IIA, Cyclin E: POS
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.56031247
1053_at 5.630389226
117_at 6.424410288
121_at 8.430819399
1255_g_at 4.178124458
1294_at 7.73448671
1316_at 6.970142498
1320_at 4.906432432
1405_i_at 7.289534316
1431_at 4.516829384
1438_at 7.20917961
1487_at 7.820016572
1494_f_at 6.923308783
1598_g_at 10.15534464
160020_at 7.954244475
1729_at 8.60584605
1773_at 5.379441857
177_at 5.251149674
179_at 9.137533872
1861_at 5.562340609

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136417.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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