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Sample GSM136416 Query DataSets for GSM136416
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #28
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 28
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB, Cyclin E: POS
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.76271275
1053_at 5.873947235
117_at 6.698563097
121_at 8.378434128
1255_g_at 4.102979016
1294_at 7.320670949
1316_at 6.559032926
1320_at 4.794908969
1405_i_at 6.326486419
1431_at 4.060218254
1438_at 8.121072022
1487_at 7.625117203
1494_f_at 6.626125592
1598_g_at 10.20927924
160020_at 8.117285812
1729_at 8.173471913
1773_at 5.305753367
177_at 5.076386242
179_at 8.535388523
1861_at 5.635393973

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136416.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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