GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136411 Query DataSets for GSM136411
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #24
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 24
race: African American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: U, Stage: IIA, Cyclin E: unknown
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.679646
1053_at 5.684670595
117_at 6.418576256
121_at 8.253583411
1255_g_at 4.143628046
1294_at 8.508860939
1316_at 6.385949024
1320_at 4.994187946
1405_i_at 8.220874251
1431_at 4.270618289
1438_at 6.771514605
1487_at 7.685090353
1494_f_at 6.807560636
1598_g_at 9.783685923
160020_at 7.770219001
1729_at 8.154463179
1773_at 5.367690675
177_at 5.184733392
179_at 8.867649567
1861_at 5.730349948

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136411.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap