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Sample GSM136408 Query DataSets for GSM136408
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #21
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 21
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB; Cyclin E: POS
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.01461553
1053_at 5.767708853
117_at 6.521520727
121_at 8.749665024
1255_g_at 4.268622015
1294_at 7.667154096
1316_at 6.448679332
1320_at 5.256510599
1405_i_at 6.431375789
1431_at 4.467277138
1438_at 7.22124615
1487_at 7.633995591
1494_f_at 7.091148927
1598_g_at 9.682588795
160020_at 7.968684853
1729_at 7.497670198
1773_at 5.449871315
177_at 5.247834577
179_at 9.24622175
1861_at 5.806162353

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136408.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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