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Sample GSM136407 Query DataSets for GSM136407
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #20
Sample type RNA
 
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 20
race: European American
tnm_stage: IIB
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB, Cyclin E: NEG
Data processing RMA
 
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Lab LHC
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Relations
Reanalyzed by GSE47561

Data table header descriptions
ID_REF Affy ID
VALUE RMA log 2 expression levels

Data table
ID_REF VALUE
1007_s_at 11.03811673
1053_at 5.924207543
117_at 6.411351268
121_at 8.124484813
1255_g_at 4.231102566
1294_at 7.676128233
1316_at 6.569914412
1320_at 4.970558538
1405_i_at 5.735866869
1431_at 4.198991582
1438_at 6.705135232
1487_at 7.554443076
1494_f_at 8.125393494
1598_g_at 9.756210917
160020_at 7.595763863
1729_at 8.229169532
1773_at 5.273036666
177_at 5.0870394
179_at 8.668336445
1861_at 6.246013752

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM136407.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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