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Sample GSM136406 Query DataSets for GSM136406
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #19
Sample type RNA
 
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 19
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: POS, Stage: IIB, Cyclin E: POS
Data processing RMA
 
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Lab LHC
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Relations
Reanalyzed by GSE47561

Data table header descriptions
ID_REF Affy ID
VALUE RMA log 2 expression levels

Data table
ID_REF VALUE
1007_s_at 11.02993144
1053_at 5.936931627
117_at 6.048090285
121_at 8.281328107
1255_g_at 4.02961619
1294_at 7.185173762
1316_at 6.247285945
1320_at 4.87634187
1405_i_at 5.676699583
1431_at 4.085524295
1438_at 8.21810031
1487_at 7.877274761
1494_f_at 6.544096659
1598_g_at 9.785779348
160020_at 7.696142993
1729_at 8.35246704
1773_at 5.179346946
177_at 5.288185143
179_at 8.705854036
1861_at 5.640808886

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM136406.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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