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Sample GSM136405 Query DataSets for GSM136405
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #18
Sample type RNA
 
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 18
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB, Cyclin E: NEG
Data processing RMA
 
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Lab LHC
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Relations
Reanalyzed by GSE47561

Data table header descriptions
ID_REF Affy ID
VALUE RMA log 2 expression levels

Data table
ID_REF VALUE
1007_s_at 10.56711981
1053_at 5.560750961
117_at 6.666958975
121_at 8.663865034
1255_g_at 4.107898362
1294_at 8.367003235
1316_at 6.663538713
1320_at 4.73529744
1405_i_at 7.68492305
1431_at 4.124575477
1438_at 6.808694827
1487_at 7.70164728
1494_f_at 6.72196319
1598_g_at 10.11126558
160020_at 7.963440111
1729_at 8.337663868
1773_at 5.26159751
177_at 5.263670196
179_at 8.819676968
1861_at 5.290535741

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM136405.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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