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Sample GSM136404 Query DataSets for GSM136404
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #17
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 17
race: European American
tnm_stage: I
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: I, Cyclin E: NEG
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.72030765
1053_at 5.699519967
117_at 6.489043023
121_at 8.66918163
1255_g_at 4.22869316
1294_at 7.895352989
1316_at 7.017536289
1320_at 4.900083984
1405_i_at 7.110859141
1431_at 4.229383803
1438_at 6.857076527
1487_at 7.563477966
1494_f_at 6.749131581
1598_g_at 9.705684909
160020_at 7.757144941
1729_at 8.414599669
1773_at 5.294447588
177_at 5.946624456
179_at 8.695894939
1861_at 5.759577163

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136404.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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