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Sample GSM136390 Query DataSets for GSM136390
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #5
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Alive
patient_id: 5
race: European American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.57295509
1053_at 5.691004391
117_at 6.232715999
121_at 8.38042653
1255_g_at 4.153740386
1294_at 9.316172498
1316_at 6.968398459
1320_at 4.79747118
1405_i_at 4.900544312
1431_at 4.328183096
1438_at 6.71829143
1487_at 7.329410259
1494_f_at 6.487893406
1598_g_at 9.954429547
160020_at 7.63854389
1729_at 8.723096214
1773_at 5.338319249
177_at 4.979822533
179_at 8.836787255
1861_at 6.123363901

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136390.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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