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Sample GSM136389 Query DataSets for GSM136389
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #4
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Alive
patient_id: 4
race: European American
tnm_stage: I
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: I, Cyclin E: POS
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.618567127
1053_at 5.576563828
117_at 6.327352075
121_at 8.371940957
1255_g_at 4.323524969
1294_at 7.71331739
1316_at 6.563058306
1320_at 5.120448922
1405_i_at 7.195025198
1431_at 4.413507768
1438_at 6.9167359
1487_at 7.443325408
1494_f_at 7.224447645
1598_g_at 10.00228228
160020_at 7.824149964
1729_at 7.883171232
1773_at 5.105196584
177_at 5.279788882
179_at 8.594316864
1861_at 5.774904698

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136389.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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