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Sample GSM136388 Query DataSets for GSM136388
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #3
Sample type RNA
 
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Alive
patient_id: 3
race: African American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing RMA
 
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Lab LHC
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Relations
Reanalyzed by GSE47561

Data table header descriptions
ID_REF Affy ID
VALUE RMA log 2 expression levels

Data table
ID_REF VALUE
1007_s_at 10.82588015
1053_at 5.771452095
117_at 6.628956104
121_at 8.341318365
1255_g_at 4.310932192
1294_at 8.268275206
1316_at 6.754286664
1320_at 5.1824734
1405_i_at 6.338182803
1431_at 4.407492294
1438_at 7.23784879
1487_at 7.585761408
1494_f_at 7.047662892
1598_g_at 9.343598508
160020_at 7.706264755
1729_at 7.845232397
1773_at 5.204877799
177_at 5.143230005
179_at 8.882916632
1861_at 5.896446358

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM136388.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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