GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136379 Query DataSets for GSM136379
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #43
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: IBC
status: Deceased
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: NEG, Her2Neu: NEG, Stage: IIIA, Clinical IBC: Yes
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.35869982
1053_at 5.736810048
117_at 6.143019268
121_at 8.245473454
1255_g_at 4.171645596
1294_at 8.02170648
1316_at 6.167039211
1320_at 4.83367796
1405_i_at 7.261023333
1431_at 4.060137907
1438_at 6.835562567
1487_at 7.940802419
1494_f_at 6.499473654
1598_g_at 10.61616595
160020_at 7.759823415
1729_at 7.970519521
1773_at 5.405624905
177_at 5.103242445
179_at 8.59146348
1861_at 5.376418611

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136379.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap