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GEO accession:
Sample GSM136371
Query DataSets for GSM136371
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #35
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 35
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: POS, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.897426523
1053_at
4.980914105
117_at
6.993514802
121_at
8.159121573
1255_g_at
3.949441493
1294_at
7.897205792
1316_at
6.351522152
1320_at
4.659973512
1405_i_at
6.652038126
1431_at
3.869913022
1438_at
6.431679576
1487_at
7.104130225
1494_f_at
6.275111991
1598_g_at
10.99124363
160020_at
7.461571439
1729_at
8.350800159
1773_at
4.973686003
177_at
5.120131497
179_at
8.482372896
1861_at
5.291268587
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136371.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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