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Sample GSM136371 Query DataSets for GSM136371
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #35
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 35
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: NEG, Her2Neu: POS, Stage: IIB
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.897426523
1053_at 4.980914105
117_at 6.993514802
121_at 8.159121573
1255_g_at 3.949441493
1294_at 7.897205792
1316_at 6.351522152
1320_at 4.659973512
1405_i_at 6.652038126
1431_at 3.869913022
1438_at 6.431679576
1487_at 7.104130225
1494_f_at 6.275111991
1598_g_at 10.99124363
160020_at 7.461571439
1729_at 8.350800159
1773_at 4.973686003
177_at 5.120131497
179_at 8.482372896
1861_at 5.291268587

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136371.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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