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Sample GSM136369 Query DataSets for GSM136369
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #29
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 29
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: POS, Stage: IIA
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.538085972
1053_at 4.77067546
117_at 6.144402191
121_at 8.271157905
1255_g_at 4.067706554
1294_at 7.961148557
1316_at 6.665897454
1320_at 4.720024788
1405_i_at 7.761149155
1431_at 4.094993311
1438_at 6.582476425
1487_at 7.347522894
1494_f_at 6.620635128
1598_g_at 10.51126972
160020_at 7.606224349
1729_at 8.117165487
1773_at 5.042150503
177_at 4.983622197
179_at 8.834633057
1861_at 5.338002094

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136369.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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