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GEO accession:
Sample GSM136369
Query DataSets for GSM136369
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #29
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 29
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: POS, Stage: IIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.538085972
1053_at
4.77067546
117_at
6.144402191
121_at
8.271157905
1255_g_at
4.067706554
1294_at
7.961148557
1316_at
6.665897454
1320_at
4.720024788
1405_i_at
7.761149155
1431_at
4.094993311
1438_at
6.582476425
1487_at
7.347522894
1494_f_at
6.620635128
1598_g_at
10.51126972
160020_at
7.606224349
1729_at
8.117165487
1773_at
5.042150503
177_at
4.983622197
179_at
8.834633057
1861_at
5.338002094
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136369.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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