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GEO accession:
Sample GSM136365
Query DataSets for GSM136365
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #26
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 26
race: African American
tnm_stage: I
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: I
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.754838504
1053_at
4.829999071
117_at
6.200463628
121_at
7.689262626
1255_g_at
3.856190796
1294_at
7.801968875
1316_at
6.368792252
1320_at
4.794756592
1405_i_at
6.004143609
1431_at
4.082762402
1438_at
6.46553011
1487_at
7.24964365
1494_f_at
6.411452581
1598_g_at
9.856201446
160020_at
7.348046101
1729_at
8.339665491
1773_at
5.122086512
177_at
5.055677524
179_at
8.347313932
1861_at
5.082770521
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136365.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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