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Sample GSM136360 Query DataSets for GSM136360
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #21
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 21
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.295903432
1053_at 4.998874289
117_at 6.21246661
121_at 8.283729507
1255_g_at 4.152484251
1294_at 7.657128887
1316_at 6.485569491
1320_at 4.76572784
1405_i_at 7.010003221
1431_at 3.973156816
1438_at 6.598946249
1487_at 7.410654116
1494_f_at 6.658780709
1598_g_at 10.57886485
160020_at 7.670518254
1729_at 7.903041743
1773_at 5.022088628
177_at 5.038166631
179_at 8.909651732
1861_at 5.331345051

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136360.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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