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GEO accession:
Sample GSM136360
Query DataSets for GSM136360
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #21
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 21
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.295903432
1053_at
4.998874289
117_at
6.21246661
121_at
8.283729507
1255_g_at
4.152484251
1294_at
7.657128887
1316_at
6.485569491
1320_at
4.76572784
1405_i_at
7.010003221
1431_at
3.973156816
1438_at
6.598946249
1487_at
7.410654116
1494_f_at
6.658780709
1598_g_at
10.57886485
160020_at
7.670518254
1729_at
7.903041743
1773_at
5.022088628
177_at
5.038166631
179_at
8.909651732
1861_at
5.331345051
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136360.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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