GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136359 Query DataSets for GSM136359
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #20
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 20
race: European American
tnm_stage: IIB
er_status: POS
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.35850212
1053_at 4.766573465
117_at 6.379799904
121_at 7.968834915
1255_g_at 3.90166345
1294_at 7.952459088
1316_at 6.238829981
1320_at 4.711935413
1405_i_at 5.415734283
1431_at 3.677322891
1438_at 6.400499625
1487_at 7.056397416
1494_f_at 7.303541518
1598_g_at 10.78552253
160020_at 7.250480965
1729_at 8.11361649
1773_at 5.030675077
177_at 4.938755817
179_at 8.377068896
1861_at 5.711918803

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136359.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap