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GEO accession:
Sample GSM136359
Query DataSets for GSM136359
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #20
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 20
race: European American
tnm_stage: IIB
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.35850212
1053_at
4.766573465
117_at
6.379799904
121_at
7.968834915
1255_g_at
3.90166345
1294_at
7.952459088
1316_at
6.238829981
1320_at
4.711935413
1405_i_at
5.415734283
1431_at
3.677322891
1438_at
6.400499625
1487_at
7.056397416
1494_f_at
7.303541518
1598_g_at
10.78552253
160020_at
7.250480965
1729_at
8.11361649
1773_at
5.030675077
177_at
4.938755817
179_at
8.377068896
1861_at
5.711918803
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136359.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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