GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136357 Query DataSets for GSM136357
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #18
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 18
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.395606279
1053_at 4.804395857
117_at 6.560889362
121_at 8.157595439
1255_g_at 3.91622302
1294_at 8.36049086
1316_at 7.19113342
1320_at 4.626699812
1405_i_at 7.128544949
1431_at 3.758770771
1438_at 6.368987224
1487_at 7.220172199
1494_f_at 6.495928005
1598_g_at 10.38577085
160020_at 7.593147303
1729_at 8.117190676
1773_at 5.157460937
177_at 5.109723596
179_at 8.474546404
1861_at 5.413035259

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136357.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap