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GEO accession:
Sample GSM136356
Query DataSets for GSM136356
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #17
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 17
race: European American
tnm_stage: I
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: I
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.053692848
1053_at
4.865836742
117_at
6.26776793
121_at
8.105081321
1255_g_at
4.237739663
1294_at
7.985689498
1316_at
6.708365552
1320_at
4.584437999
1405_i_at
6.621001049
1431_at
3.962877127
1438_at
6.567649226
1487_at
7.011584335
1494_f_at
6.403922297
1598_g_at
10.44631753
160020_at
7.623736529
1729_at
7.882935917
1773_at
5.016288371
177_at
5.366386524
179_at
8.424236424
1861_at
5.219939986
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136356.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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