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GEO accession:
Sample GSM136354
Query DataSets for GSM136354
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #33
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 33
race: African American
tnm_stage: IIA
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.30228457
1053_at
5.048775841
117_at
6.539255393
121_at
8.31175485
1255_g_at
3.937772139
1294_at
8.997448639
1316_at
7.080161199
1320_at
4.582565126
1405_i_at
6.818380746
1431_at
3.951243613
1438_at
6.387926557
1487_at
7.336229901
1494_f_at
6.429467334
1598_g_at
10.68520326
160020_at
7.523180868
1729_at
8.405050649
1773_at
5.261951849
177_at
5.078989236
179_at
8.482276571
1861_at
5.867363272
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136354.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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