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Sample GSM136354 Query DataSets for GSM136354
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #33
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 33
race: African American
tnm_stage: IIA
er_status: POS
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIA
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.30228457
1053_at 5.048775841
117_at 6.539255393
121_at 8.31175485
1255_g_at 3.937772139
1294_at 8.997448639
1316_at 7.080161199
1320_at 4.582565126
1405_i_at 6.818380746
1431_at 3.951243613
1438_at 6.387926557
1487_at 7.336229901
1494_f_at 6.429467334
1598_g_at 10.68520326
160020_at 7.523180868
1729_at 8.405050649
1773_at 5.261951849
177_at 5.078989236
179_at 8.482276571
1861_at 5.867363272

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136354.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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