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Sample GSM136353 Query DataSets for GSM136353
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #32
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 32
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: NEG, Her2Neu: POS, Stage: IIB
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.957983926
1053_at 5.10047662
117_at 5.935306448
121_at 8.056266445
1255_g_at 3.94073631
1294_at 7.293211682
1316_at 6.819336198
1320_at 4.512330374
1405_i_at 5.417738985
1431_at 3.971477812
1438_at 6.619233798
1487_at 7.332969863
1494_f_at 6.376318586
1598_g_at 9.652286082
160020_at 7.508515265
1729_at 7.940521365
1773_at 5.181073313
177_at 4.940560172
179_at 8.497170056
1861_at 5.235391316

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136353.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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