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GEO accession:
Sample GSM136352
Query DataSets for GSM136352
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #15
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 15
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.44679562
1053_at
5.249176939
117_at
6.177545239
121_at
8.039636359
1255_g_at
4.165754166
1294_at
8.194395063
1316_at
6.438946314
1320_at
4.533549499
1405_i_at
6.883750473
1431_at
3.936128462
1438_at
6.505870687
1487_at
7.251452725
1494_f_at
6.525664352
1598_g_at
11.05596546
160020_at
7.615733326
1729_at
8.343086789
1773_at
5.187246567
177_at
5.154199229
179_at
8.767486925
1861_at
5.604058595
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136352.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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