strain: Moyo-R Sex: female genotype/variation: wild-type phenotype (for dengue virus): Refractory infected with: Dengue_Serotype3 time point: 3hr post feeding
Growth protocol
Moyo-S females were orally fed with defribinated sheep blood that was either contaminated or not conatminated with different serotypes of dengue virus (DENV-1 Hawaii, DENV-2 JAM1409, DENV-3 YUC97 and DENV-4 H-241). Moyo-R females were orally fed with defribinated sheep blood that was either contaminated or not conatminated with different serotypes of dengue virus (DENV-1 Hawaii, DENV-2 JAM1409, DENV-3 YUC97 and DENV-4 H-241).
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted using the RNeasy Mini kit (Qiagen Inc., Valencia, CA, USA) and the RNAprotect reagent (Qiagen) and DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the Harvard-Partners Center for Genetics and Genomics (Harvard Medical School, Cambridge, MA USA).
Label
Cy3
Label protocol
Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
Hybridization protocol
Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.
Scan protocol
Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
Description
Sample 17
Data processing
The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249), quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and background correction as implemented in the NimbleScan software package, version 2.4.27 (Roche NimbleGen, Inc.).
