|
Status |
Public on May 06, 2014 |
Title |
I150 |
Sample type |
genomic |
|
|
Source name |
whole blood, healthy
|
Organism |
Homo sapiens |
Characteristics |
tissue: peripheral blood lymphocytes gender: F twin: DZ age: 12
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted from peripheral blood lymphocytes by the salt precipitation method
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
samples were scanned using an Illumina bead array reader
|
Data processing |
GenomeStudio Methylation Module v1.8 Raw data file: raw_data_signal_intensities.txt contains Unmethylated and methylated signal intensities Processed data file: average_beta.txt: Normalised Average Beta (Normalised to internal controls, background subtraction) and the Detection P-value
|
|
|
Submission date |
Mar 21, 2014 |
Last update date |
May 06, 2014 |
Contact name |
Allan F McRae |
E-mail(s) |
a.mcrae@uq.edu.au
|
Organization name |
University of Queensland
|
Department |
Queensland Brain Institute
|
Lab |
Centre of Neurogenetics and Statistical Genomics
|
Street address |
QBI Building (#79)
|
City |
St Lucia |
State/province |
QLD |
ZIP/Postal code |
4072 |
Country |
Australia |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE56105 |
Brisbane Systems Genetics Study – DNA methylation data |
|