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Sample GSM1347709 Query DataSets for GSM1347709
Status Public on Jul 29, 2014
Title MSC donor3_TCP
Sample type RNA
Source name mesenchymal stromal cells (MSC)
Organism Homo sapiens
Characteristics cell type: MSC
substrate: tissue culture plastic (TCP)
donor: donor3
Treatment protocol MSCs were cultivated for 4 passages in parrallel on TCP, 50 kPa PDMS and 1.5 kPa PDMS.
Growth protocol MSCs were cultivated in 10% hPL-Medium at 37°C at humified atmosphere containing 5% carbon dioxide with medium changes twice per week. Passaging was carried out upon 80% confluent growth. MSCs were isolated from lipoaspirates after patient’s written consent using guidelines approved by the Ethic committee of the RWTH Aachen University Medical School (Permit Number EK163/07).
Extracted molecule total RNA
Extraction protocol RNA was isolated from 106 cells using the NucleoSpin RNA Isolation Kit.
Label biotin
Label protocol Standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Arrays were scanned using Affymetrix GeneChip Scanner 3000.
Description gene expression data of MSC donor3 cultivated for 4 passages on TCP
Data processing CEL files were processed using the Affymetrix Power Tools (APT) Software Package. Normalization was done employing RMA (Irizarry et al., Biostatistics 4, 249-264, 2003).
Submission date Mar 13, 2014
Last update date Jul 29, 2014
Contact name Wolfgang Wagner
Phone +49 241 8088611
Organization name RWTH Aachen University
Department Helmholtz Institute for Biomedical Engineering
Lab Stem Cell Biology and Cellular Engineering
Street address Pauwelsstrasse 20
City Aachen
ZIP/Postal code 52074
Country Germany
Platform ID GPL10739
Series (2)
GSE55867 Matrix Elasticity Does Not Affect Replicative Senescence or DNA Methylation Patterns of Mesenchymal Stem Cells [gene expression profiling]
GSE55889 Matrix Elasticity Does Not Affect Replicative Senescence or DNA Methylation Patterns of Mesenchymal Stem Cells

Data table header descriptions
VALUE RMA signal

Data table
7896739 3.34730
7896741 3.77727
7896743 7.94006
7896745 6.17084
7896751 5.93564
7896753 10.22480
7896755 8.51431
7896757 7.52444
7896758 8.29329
7896762 10.94235
7896763 7.81831
7896764 8.70671
7896766 7.37204
7896768 11.00506
7896771 7.96344
7896773 8.15156
7896776 8.66737
7896777 8.46622
7896778 8.46168
7896783 9.19469

Total number of rows: 190269

Table truncated, full table size 3023 Kbytes.

Supplementary file Size Download File type/resource
GSM1347709_AT60_TCP_HuGene-1_0-st-v1_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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