|
| Status |
Public on Aug 04, 2014 |
| Title |
p3_3 |
| Sample type |
genomic |
| |
|
| Source name |
Intermediate reprogrammed cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: induced pluripotent stem cells 7 days after 3rd passage
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
GenomicDNA lysates were extracted with DNeasy(R) blood and tissue kit (QIAgen) in accordance with manufacture's protocol.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina protocol
|
| Scan protocol |
Standard recommended Illumina scanner setting protocol using BeadArray Reader
|
| Data processing |
Illumina GenomeStudio software Unmethylated(Signal_A) and methylated(Signal_B) signal intensities
|
| |
|
| Submission date |
Mar 11, 2014 |
| Last update date |
Aug 04, 2014 |
| Contact name |
Kazutoshi Takahashi |
| E-mail(s) |
kazu@cira.kyoto-u.ac.jp
|
| Organization name |
Kyoto University
|
| Department |
Center for iPS Cell Research and Application
|
| Street address |
53 Kawahara-cho, Shogoin, Sakyo-ku
|
| City |
Kyoto |
| ZIP/Postal code |
606-8507 |
| Country |
Japan |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE54848 |
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency |
|
