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Sample GSM1346016 Query DataSets for GSM1346016
Status Public on Aug 04, 2014
Title p1_2
Sample type genomic
 
Source name Intermediate reprogrammed cells
Organism Homo sapiens
Characteristics cell type: induced pluripotent stem cells 7 days after TRA-1-60(+) cell sorting on day 28
Extracted molecule genomic DNA
Extraction protocol GenomicDNA lysates were extracted with DNeasy(R) blood and tissue kit (QIAgen) in accordance with manufacture's protocol.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol Standard recommended Illumina scanner setting protocol using BeadArray Reader
Data processing Illumina GenomeStudio software Unmethylated(Signal_A) and methylated(Signal_B) signal intensities
 
Submission date Mar 11, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
E-mail(s) kazu@cira.kyoto-u.ac.jp
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL13534
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
ID_REF
VALUE Average Beta or normalized (provide the normalization method) Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.52821 0
cg00000108 0.90415 0
cg00000109 0.827 0
cg00000165 0.10504 0
cg00000236 0.78179 0
cg00000289 0.62301 0
cg00000292 0.84987 0
cg00000321 0.44947 0
cg00000363 0.14429 0
cg00000622 0.02435 0
cg00000658 0.74351 0
cg00000714 0.23691 0
cg00000721 0.85639 0
cg00000734 0.07308 0
cg00000769 0.05627 0
cg00000807 0.72264 0
cg00000884 0.79648 0
cg00000905 0.14528 0
cg00000924 0.54223 0
cg00000948 0.78143 0

Total number of rows: 485577

Table truncated, full table size 9911 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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