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Sample GSM1342253 Query DataSets for GSM1342253
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 51
Sample type genomic
Source name GLIOMA 51
Organism Homo sapiens
Characteristics mutation: H3F3A.K27M
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 51 Detection Pval

Data table
ID_REF VALUE GLIOMA 51 Detection Pval
cg00050873 0.896177980604678 0.962989944768022
cg00212031 0.408224104481143 0.997833980221543
cg00213748 0.0642684487416465 0.957527325509733
cg00214611 0.0255352582989589 0.990185722947237
cg00455876 0.762771247739602 0.00204495167603747
cg01707559 0.0296643571339667 0
cg02004872 0.708207313720099 0.0184927029254542
cg02011394 0.963956534394101 0.955852070579266
cg02050847 0.0333735424205871 0.999846768416059
cg02233190 0.133984867591425 0.972001381631806
cg02494853 0.172763083849184 0
cg02839557 0.156362815884477 0.632034034588155
cg02842889 0.946256601429015 0.977836305611969
cg03052502 0.841257531468114 0.997044260424955
cg03155755 0.854131816661091 0.996003783887532
cg03244189 0.978086732345088 5.82090836986904e-06
cg03443143 0.862397617274758 0.738273509888483
cg03683899 0.338307836403372 0.956478642302687
cg03695421 0.0655137334689725 0.0948427907901419
cg03706273 0.0746268656716418 0

Total number of rows: 485512

Table truncated, full table size 14816 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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