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Sample GSM1342251 Query DataSets for GSM1342251
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 49
Sample type genomic
Source name GLIOMA 49
Organism Homo sapiens
Characteristics mutation: H3F3A.G34R.V
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 49 Detection Pval

Data table
ID_REF VALUE GLIOMA 49 Detection Pval
cg00050873 0.842567130378518 0.830042362125221
cg00212031 0.499707955297691 0.983752955815059
cg00213748 0.0581389169368125 0.883197148771912
cg00214611 0.0216600529100529 0.998881188932485
cg00455876 0.541996624691679 0.604684395730866
cg01707559 0.0218694372797617 0
cg02004872 0.0889663871781554 0
cg02011394 0.953041418309644 0.946005398092794
cg02050847 0.0379540400296516 0.854281100722701
cg02233190 0.171236607953514 0.52757624738618
cg02494853 0.0800341970274892 0
cg02839557 0.931764801166275 0.997901734011526
cg02842889 0.659407259407259 0.982192598324937
cg03052502 0.490744016035845 0.999466047826607
cg03155755 0.840063498362933 0.949080087364104
cg03244189 0.918777777777778 3.89887233465114e-06
cg03443143 0.921406310868718 0.99457166918954
cg03683899 0.345182413470533 0.789359410990891
cg03695421 0.871106136914755 0.701072058067951
cg03706273 0.107288198298187 0

Total number of rows: 485512

Table truncated, full table size 14822 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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