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Sample GSM1342250 Query DataSets for GSM1342250
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 48
Sample type genomic
Source name GLIOMA 48
Organism Homo sapiens
Characteristics mutation: H3F3A.G34R.V
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 48 Detection Pval

Data table
ID_REF VALUE GLIOMA 48 Detection Pval
cg00050873 0.217811347268575 0.932348817710487
cg00212031 0.101911409151042 0.995972851103083
cg00213748 0.0465405330755421 0.760095366876204
cg00214611 0.0202058955176162 0.935442897393895
cg00455876 0.840080971659919 0.57954956688204
cg01707559 0.0176904176904177 0
cg02004872 0.184834123222749 0
cg02011394 0.9639595923949 0.900559174525226
cg02050847 0.0250981491867639 0.850792860668806
cg02233190 0.105765765765766 0.0175248550233728
cg02494853 0.0738743106478395 0
cg02839557 0.872615474000194 0.954123947586875
cg02842889 0.887320231910248 0.912823586299976
cg03052502 0.404256382075236 0.999999878531394
cg03155755 0.810198300283286 0.693525365473811
cg03244189 0.900989196334959 1.07462505560818e-09
cg03443143 0.938914910226386 0.989175786940562
cg03683899 0.533023214991004 0.908281328442102
cg03695421 0.690138686690675 0.28068375605784
cg03706273 0.0708934517203108 0

Total number of rows: 485512

Table truncated, full table size 14801 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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