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Sample GSM1342238 Query DataSets for GSM1342238
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 37
Sample type genomic
Source name GLIOMA 37
Organism Homo sapiens
Characteristics mutation: H3F3A.G34R.V
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 37 Detection Pval

Data table
ID_REF VALUE GLIOMA 37 Detection Pval
cg00050873 0.824658396260338 0.996875505035786
cg00212031 0.0321934468450422 0.99994641651109
cg00213748 0.0476159201366084 0.801689339081837
cg00214611 0.0225273981869842 0.999733501965588
cg00455876 0.659636739261427 0.438430139083886
cg01707559 0.0134177215189873 0
cg02004872 0.551302785265049 0
cg02011394 0.952646671316748 0.738273509888483
cg02050847 0.0241099753260486 0.981648288326172
cg02233190 0.0981704596162428 0.378606908596128
cg02494853 0.0557600627602438 0
cg02839557 0.608970647187208 0.994646628870307
cg02842889 0.75859798727153 0.969506207007552
cg03052502 0.345241233851832 0.999967276185136
cg03155755 0.795749092794194 0.970403099747692
cg03244189 0.976572704672818 1.35194921924153e-09
cg03443143 0.941031613976706 0.997044260424955
cg03683899 0.538965768390386 0.994131798521017
cg03695421 0.65541829035735 0.0886714511369316
cg03706273 0.0706469571894797 0

Total number of rows: 485512

Table truncated, full table size 14814 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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