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Sample GSM1342236 Query DataSets for GSM1342236
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 35
Sample type genomic
Source name GLIOMA 35
Organism Homo sapiens
Characteristics mutation: WT
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 35 Detection Pval

Data table
ID_REF VALUE GLIOMA 35 Detection Pval
cg00050873 0.75111976630964 0.995777317283248
cg00212031 0.795208966704516 0.9996164821714
cg00213748 0.0337531486146096 0.329378176494573
cg00214611 0.00851830616758129 0.999714175090579
cg00455876 0.796044599983723 0.737071336960347
cg01707559 0.0119744443169211 0
cg02004872 0.391775836972344 3.91012777711808e-11
cg02011394 0.952241579558653 0.767518279869605
cg02050847 0.0182191024528748 0.986327185310855
cg02233190 0.0888988161715434 0.0537926213577443
cg02494853 0.067186048173826 0
cg02839557 0.692665890570431 0.996834067905328
cg02842889 0.796568823482364 0.991114451215324
cg03052502 0.464493528084551 0.980473145621597
cg03155755 0.817476732161324 0.826255069244654
cg03244189 0.971962181547203 1.26790752452699e-07
cg03443143 0.471653807447165 0.923537832131599
cg03683899 0.703042389388739 0.580177359485241
cg03695421 0.679323725055432 0.203648391566856
cg03706273 0.078483606557377 0

Total number of rows: 485512

Table truncated, full table size 14824 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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