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Sample GSM1342233 Query DataSets for GSM1342233
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 32
Sample type genomic
Source name GLIOMA 32
Organism Homo sapiens
Characteristics mutation: IDH1
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 32 Detection Pval

Data table
ID_REF VALUE GLIOMA 32 Detection Pval
cg00050873 0.86374072294303 0.940707474352186
cg00212031 0.922067830697504 0.999519782955464
cg00213748 0.0325008552856654 0.999123953241226
cg00214611 0.0185734216951517 0.94343374064927
cg00455876 0.837457627118644 0.200680790324286
cg01707559 0.0176132578281146 0
cg02004872 0.512939358825801 1.89262918670607e-08
cg02011394 0.943148140418249 0.919822994241926
cg02050847 0.021597265382225 0.995405346117613
cg02233190 0.110819327731092 0.640764748099093
cg02494853 0.4219953130231 0
cg02839557 0.567873539232053 0.992145735628282
cg02842889 0.828819924886341 0.805259009793962
cg03052502 0.698572042087181 0.999990748605441
cg03155755 0.798329853862213 0.994835757644654
cg03244189 0.858661257606491 0.00361204296192441
cg03443143 0.952674897119342 0.961189205942193
cg03683899 0.328579725108085 0.778614975701962
cg03695421 0.336694164375191 0.632034034588155
cg03706273 0.0770272885620283 0

Total number of rows: 485512

Table truncated, full table size 14829 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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