|
Status |
Public on Mar 09, 2014 |
Title |
genomic DNA from patient GLIOMA 30 |
Sample type |
genomic |
|
|
Source name |
GLIOMA 30
|
Organism |
Homo sapiens |
Characteristics |
mutation: WT tissue: glioblastomas
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Data processing |
We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
|
|
|
Submission date |
Mar 08, 2014 |
Last update date |
Jan 05, 2015 |
Contact name |
Simon Papillon-Cavanagh |
Organization name |
McGill University
|
Department |
Human Genetics
|
Lab |
Majewski
|
Street address |
740 Dr Penfield
|
City |
Montrea |
State/province |
Quebec |
ZIP/Postal code |
H3A0G1 |
Country |
Canada |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE55712 |
Genome wide methylation profliling of pediatric glioblastomas. |
|