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Sample GSM1342230 Query DataSets for GSM1342230
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 29
Sample type genomic
Source name GLIOMA 29
Organism Homo sapiens
Characteristics mutation: WT
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 29 Detection Pval

Data table
ID_REF VALUE GLIOMA 29 Detection Pval
cg00050873 0.833576820063307 0.999843259158785
cg00212031 0.775948528716056 0.99575376385202
cg00213748 0.0767839321357285 0.854977913866648
cg00214611 0.0229414376634269 0.999468434315448
cg00455876 0.763257005122025 0.69930396962186
cg01707559 0.0104169985027556 0
cg02004872 0.746324978879189 1.84547597203988e-08
cg02011394 0.972288911495422 0.953483802773547
cg02050847 0.0338774793751097 0.999613848066664
cg02233190 0.0750128667009779 0.805917909309067
cg02494853 0.071318782662158 0
cg02839557 0.67105527638191 0.999759825205649
cg02842889 0.883211138265571 0.992856961012538
cg03052502 0.779528334400079 0.985451726572696
cg03155755 0.801324503311258 0.53162361863926
cg03244189 0.980870508054523 0.00454444770668549
cg03443143 0.947051960872296 0.900228554988035
cg03683899 0.821548943572645 0.993954930032718
cg03695421 0.689565985364623 0.783362442612442
cg03706273 0.058906858694369 0

Total number of rows: 485512

Table truncated, full table size 14819 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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