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Sample GSM1342226 Query DataSets for GSM1342226
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 25
Sample type genomic
Source name GLIOMA 25
Organism Homo sapiens
Characteristics mutation: H3F3A.G34R.V
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 25 Detection Pval

Data table
ID_REF VALUE GLIOMA 25 Detection Pval
cg00050873 0.826540458576483 0.939800821525363
cg00212031 0.875039885130823 0.993837775219883
cg00213748 0.0842269214640867 0.147495452745403
cg00214611 0.0234638409137824 0.687266979739051
cg00455876 0.86925123527176 0.48937956207009
cg01707559 0.0127727514635444 0
cg02004872 0.508324148732525 0
cg02011394 0.962478454943209 0.994969340557419
cg02050847 0.0234410217881292 0.993437977329392
cg02233190 0.119928666963888 0.517354708592389
cg02494853 0.0726112108517854 0
cg02839557 0.86646294881589 0.747171673549038
cg02842889 0.852406375735067 0.999580832160981
cg03052502 0.243434510974733 0.996321236759116
cg03155755 0.858064516129032 0.891325513296228
cg03244189 0.929177286591735 0.00103944606977824
cg03443143 0.950160199359203 0.0872546276373878
cg03683899 0.86141547143193 0.913062948118832
cg03695421 0.788823074942055 0.833532897126361
cg03706273 0.102828678171144 0

Total number of rows: 485512

Table truncated, full table size 14805 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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