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Sample GSM1342225 Query DataSets for GSM1342225
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 24
Sample type genomic
Source name GLIOMA 24
Organism Homo sapiens
Characteristics mutation: H3F3A.G34R.V
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 24 Detection Pval

Data table
ID_REF VALUE GLIOMA 24 Detection Pval
cg00050873 0.826409078120604 0.130993422093977
cg00212031 0.0487394957983193 0.993660905337747
cg00213748 0.137100819260993 0.87813130826987
cg00214611 0.0341310851237422 0.994746268474054
cg00455876 0.634831460674157 0.393094539224215
cg01707559 0.0169289369397099 0
cg02004872 0.25260718424102 0
cg02011394 0.948792540049414 0.964918819244451
cg02050847 0.0170749814402376 0.192065328173603
cg02233190 0.088455225241656 0.538998100088294
cg02494853 0.0838588235294118 0
cg02839557 0.913568773234201 0.996877385023982
cg02842889 0.811142959512719 0.695432126858401
cg03052502 0.165155716723549 0.993394320411434
cg03155755 0.885956644674835 0.96922422211484
cg03244189 0.819975589910496 0
cg03443143 0.922386768997946 0.438820697635377
cg03683899 0.453393037336024 0.695432126858401
cg03695421 0.735463510848126 0.942652618873987
cg03706273 0.0677856681730148 0

Total number of rows: 485512

Table truncated, full table size 15327 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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