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Sample GSM1342217 Query DataSets for GSM1342217
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 17
Sample type genomic
Source name GLIOMA 17
Organism Homo sapiens
Characteristics mutation: WT
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 17 Detection Pval

Data table
ID_REF VALUE GLIOMA 17 Detection Pval
cg00050873 0.843830570902394 0.742959533580234
cg00212031 0.0235886811996798 0.99935567155387
cg00213748 0.0465524547490768 0.99924953956774
cg00214611 0.0276077791377669 0.982315918659481
cg00455876 0.823211016476956 0.433046716095183
cg01707559 0.0140965240939274 0
cg02004872 0.105635838150289 0
cg02011394 0.938815137705568 0.99222627078295
cg02050847 0.0306115235065394 0.790343569072042
cg02233190 0.074212271973466 0.220023330561639
cg02494853 0.0681750873659895 0
cg02839557 0.899136212624585 0.9994619086976
cg02842889 0.740512683220668 0.997110703125079
cg03052502 0.504334121355398 0.999974855091182
cg03155755 0.816727716727717 0.97732954962744
cg03244189 0.941167290886392 2.49794218599719e-05
cg03443143 0.93917211328976 0.738209014795105
cg03683899 0.704371364395554 0.941891656734656
cg03695421 0.46792535355008 0.426076349107607
cg03706273 0.0930827067669173 0

Total number of rows: 485512

Table truncated, full table size 14806 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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