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Sample GSM1342212 Query DataSets for GSM1342212
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 13
Sample type genomic
Source name GLIOMA 13
Organism Homo sapiens
Characteristics mutation: WT
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 13 Detection Pval

Data table
ID_REF VALUE GLIOMA 13 Detection Pval
cg00050873 0.934917404269418 0.999368803964037
cg00212031 0.646420759296437 0.819386664024806
cg00213748 0.0487824351297405 0.994483921560538
cg00214611 0.0356011464775984 0.998696047351509
cg00455876 0.818931252760194 0.728633965314011
cg01707559 0.0121615499878036 5.32907051820075e-15
cg02004872 0.563681474480151 0.169655230746227
cg02011394 0.965107719487658 0.976279668045138
cg02050847 0.0393254289712055 0.942234514158379
cg02233190 0.123603871928518 0.803545828765236
cg02494853 0.144131827013024 0
cg02839557 0.605755395683453 0.999996966249223
cg02842889 0.948869146913916 0.991677166514067
cg03052502 0.245551601423488 0.998830525963629
cg03155755 0.822939517392667 0.883505984136115
cg03244189 0.986990107060577 0.0126411761190023
cg03443143 0.940015740948954 0.941916797960709
cg03683899 0.857058441174733 0.482067184620376
cg03695421 0.749964290815598 0.00315054305839579
cg03706273 0.0512304250559284 0

Total number of rows: 485512

Table truncated, full table size 14906 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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