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Sample GSM1342211 Query DataSets for GSM1342211
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 12
Sample type genomic
Source name GLIOMA 12
Organism Homo sapiens
Characteristics mutation: WT
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 12 Detection Pval

Data table
ID_REF VALUE GLIOMA 12 Detection Pval
cg00050873 0.913582089552239 0.38626487393147
cg00212031 0.873396392601386 0.999959691609004
cg00213748 0.049519013493447 0.696338249700303
cg00214611 0.0352376380220835 0.999443014878193
cg00455876 0.848662551440329 0.723808897738993
cg01707559 0.0136980970541308 0
cg02004872 0.515686692989009 0.0537926213577443
cg02011394 0.967597163629836 0.987200554091539
cg02050847 0.0364882795223352 0.92848612005651
cg02233190 0.174865229110512 0.378912336139299
cg02494853 0.0573153462025788 0
cg02839557 0.510993096123208 0.650038085420072
cg02842889 0.931119216740257 0.984172287696194
cg03052502 0.246273270591468 0.999302784847633
cg03155755 0.839647194910353 0.957860029020842
cg03244189 0.983091137423753 0.00611821935128742
cg03443143 0.889822338520865 0.932348817710487
cg03683899 0.0832514131236176 0.829938600182415
cg03695421 0.0282584123119729 8.24410872488635e-05
cg03706273 0.0480108055009823 0

Total number of rows: 485512

Table truncated, full table size 14876 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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