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Sample GSM1342204 Query DataSets for GSM1342204
Status Public on Mar 09, 2014
Title genomic DNA from patient GLIOMA 9
Sample type genomic
Source name GLIOMA 9
Organism Homo sapiens
Characteristics mutation: WT
tissue: glioblastomas
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing We removed probes with missing values, binding multiple genomic regions, binding targets with known sequence variants (1000 Genomes Project, SNPs with a minor allele frequency ≥ 2/120), or being located on the X or Y chromosomes. The final set contains 309,015 probes
Submission date Mar 08, 2014
Last update date Jan 05, 2015
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
Platform ID GPL13534
Series (1)
GSE55712 Genome wide methylation profliling of pediatric glioblastomas.

Data table header descriptions
VALUE Average Beta
GLIOMA 9 Detection Pval

Data table
ID_REF VALUE GLIOMA 9 Detection Pval
cg00050873 0.3086888541434 0.995890065744855
cg00212031 0.0257754477937964 0.962108824712933
cg00213748 0.0612816764132554 0.834086586659074
cg00214611 0.0242148435305354 0.99780976905605
cg00455876 0.572964363925941 0.247817650722366
cg01707559 0.0180820468744835 0
cg02004872 0.268730527669255 6.57586328645099e-06
cg02011394 0.933416853973986 0.993999823561996
cg02050847 0.02569580078125 0.846280616279692
cg02233190 0.111148994203887 0.450559341182494
cg02494853 0.0669293493131943 0
cg02839557 0.534967363793793 0.83579545048926
cg02842889 0.865226123692777 0.961310530724024
cg03052502 0.135478816368348 0.995719912300728
cg03155755 0.801052532656705 0.00196459014121264
cg03244189 0.942227644610306 4.92849505651094e-09
cg03443143 0.942761360814502 0.958576858890439
cg03683899 0.107891649237362 0.8663625018114
cg03695421 0.843335439039798 3.66929301831576e-07
cg03706273 0.0412544519192719 0

Total number of rows: 485512

Table truncated, full table size 14838 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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